Sopen10g007160

Description : SRF-type transcription factor (DNA-binding and dimerisation domain)

Gene families : OG_42_0003168 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003168_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g007160
Cluster	HCCA clusters: Cluster_169

Target	Alias	Description	ECC score	Gene Family Method
MA_10428735g0010	No alias	(at2g40390 : 181.0) unknown protein; BEST Arabidopsis...	0.02	Orthogroups_2024-Update
MA_40181g0010	No alias	(at2g40390 : 190.0) unknown protein; BEST Arabidopsis...	0.02	Orthogroups_2024-Update
Solyc10g018120	No alias	neuronal PAS domain protein (AHRD V3.3 *** AT2G40390.1)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	16	57

External Links

No external refs found!