Glyma.14G033600

Description : chromatin remodeling 5

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.14G033600
Cluster	HCCA clusters: Cluster_286

Target	Alias	Description	ECC score	Gene Family Method
102849	No alias	Homeotic gene regulator	0.02	Orthogroups_2024-Update
130534	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
At2g25170	No alias	chromatin remodeling factor CHD3 (PICKLE)...	0.03	Orthogroups_2024-Update
At2g28290	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
At3g06400	No alias	Chromatin-remodeling complex ATPase...	0.05	Orthogroups_2024-Update
At5g19310	No alias	Probable ATP-dependent DNA helicase CHR23...	0.03	Orthogroups_2024-Update
Bradi1g18910	No alias	chromatin remodeling 5	0.06	Orthogroups_2024-Update
Bradi1g26940	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
Bradi1g44177	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.05	Orthogroups_2024-Update
Bradi1g47367	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.04	Orthogroups_2024-Update
Bradi1g78440	No alias	SNF2 domain-containing protein / helicase...	0.03	Orthogroups_2024-Update
Bradi2g35740	No alias	chromatin-remodeling protein 11	0.03	Orthogroups_2024-Update
Cre03.g179300	No alias	chromatin remodeling 5	0.03	Orthogroups_2024-Update
Cre12.g537671	No alias	chromatin remodeling 4	0.04	Orthogroups_2024-Update
GRMZM2G010342	No alias	chromatin remodeling 5	0.05	Orthogroups_2024-Update
GRMZM2G316191	No alias	chromatin remodeling 4	0.05	Orthogroups_2024-Update
GRMZM2G467799	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.05	Orthogroups_2024-Update
Glyma.06G063400	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.04	Orthogroups_2024-Update
Glyma.10G250500	No alias	Homeotic gene regulator	0.03	Orthogroups_2024-Update
HORVU1Hr1G019290.1	No alias	Unknown function	0.07	Orthogroups_2024-Update
HORVU2Hr1G022450.1	No alias	component *(CHR5) of SAGA transcription co-activator...	0.03	Orthogroups_2024-Update
HORVU7Hr1G041450.33	No alias	SMARCA component *(SYD/BRM/MINU)	0.03	Orthogroups_2024-Update
LOC_Os05g05780	No alias	chromatin-remodeling complex ATPase chain, putative, expressed	0.03	Orthogroups_2024-Update
Mp3g15030.1	No alias	chromatin remodeling factor (Iswi)	0.02	Orthogroups_2024-Update
Mp4g00040.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Orthogroups_2024-Update
Mp8g17660.1	No alias	chromatin remodeling factor (Snf2)	0.02	Orthogroups_2024-Update
PSME_00001593-RA	No alias	(at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);...	0.04	Orthogroups_2024-Update
Potri.008G205600	No alias	chromatin remodeling factor17	0.03	Orthogroups_2024-Update
Seita.2G320900.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Seita.4G050000.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.02	Orthogroups_2024-Update
Sobic.002G308700.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.04	Orthogroups_2024-Update
Sobic.002G404700.1	No alias	CHD1-type chromatin remodeling factor *(CHR5) &...	0.03	Orthogroups_2024-Update
Sopen02g017710	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update
Sopen12g034530	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predicted GO
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006476	protein deacetylation	IEP	Predicted GO
BP	GO:0006720	isoprenoid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Predicted GO
BP	GO:0009892	negative regulation of metabolic process	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010629	negative regulation of gene expression	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
BP	GO:0016458	gene silencing	IEP	Predicted GO
BP	GO:0016569	covalent chromatin modification	IEP	Predicted GO
BP	GO:0016570	histone modification	IEP	Predicted GO
BP	GO:0016575	histone deacetylation	IEP	Predicted GO
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016859	cis-trans isomerase activity	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO
BP	GO:0018193	peptidyl-amino acid modification	IEP	Predicted GO
BP	GO:0018208	peptidyl-proline modification	IEP	Predicted GO
MF	GO:0022804	active transmembrane transporter activity	IEP	Predicted GO
BP	GO:0031047	gene silencing by RNA	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
BP	GO:0035601	protein deacylation	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:0098732	macromolecule deacylation	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025260	DUF4208	1540	1633
IPR001650	Helicase_C	949	1062
IPR000330	SNF2_N	647	920
IPR023780	Chromo_domain	541	595

External Links

No external refs found!

Glyma.14G033600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation