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  5. Sopen10g008020

Sopen10g008020


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g008020
Cluster HCCA clusters: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Kfl01067_g1 kfl01067_g1_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os08g10244 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Potri.019G017800 No alias Function unknown 0.03 Orthogroups_2024-Update
Solyc02g021130 No alias No description available 0.04 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.02 Orthogroups_2024-Update
Solyc12g019380 No alias No description available 0.02 Orthogroups_2024-Update
Sopen00g009040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g015430 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen02g008020 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen04g019550 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen04g035310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g005110 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g016700 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g015680 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen09g020310 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen09g025530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g007750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g011100 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g027180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
evm.model.contig_3474.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3493.3 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 701 860
IPR005162 Retrotrans_gag_dom 194 290
No external refs found!