1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.14G215100

Glyma.14G215100


Description : high mobility group A


Gene families : OG_42_0003364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003364_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.14G215100
Cluster HCCA clusters: Cluster_391

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G004878 No alias high mobility group A 0.03 Orthogroups_2024-Update
GRMZM2G106133 No alias high mobility group A 0.03 Orthogroups_2024-Update
Glyma.18G040200 No alias high mobility group A 0.06 Orthogroups_2024-Update
Solyc04g007890 No alias HMG-Y-related protein A (AHRD V3.3 *** HMGYA_ARATH) 0.04 Orthogroups_2024-Update
Solyc05g051290 No alias HMG-Y-related A (AHRD V3.3 *** A0A0B0M969_GOSAR) 0.04 Orthogroups_2024-Update
Solyc11g011160 No alias HMG-Y-related A (AHRD V3.3 *** A0A0B0M969_GOSAR) 0.03 Orthogroups_2024-Update
Sopen05g029670 No alias linker histone H1 and H5 family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 13 62
No external refs found!