Glyma.14G217400

Description : RNA helicase family protein

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.14G217400
Cluster	HCCA clusters: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
At1g32490	No alias	ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]	0.03	Orthogroups_2024-Update
Bradi1g61220	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Bradi1g64190	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Bradi4g19990	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre07.g349100	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre24.g755347	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
HORVU4Hr1G088270.14	No alias	RNA helicase *(Prp2)	0.02	Orthogroups_2024-Update
Kfl00433_0080	kfl00433_0080_v1.1	(at1g33390 : 423.0) Over-expression of this gene results...	0.02	Orthogroups_2024-Update
Mp1g21130.1	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.03	Orthogroups_2024-Update
Mp2g13680.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Orthogroups_2024-Update
Pp1s268_11V6	No alias	deah (asp-glu-ala-his) box polypeptide 35	0.03	Orthogroups_2024-Update
Seita.3G152600.1	No alias	RNA helicase *(Prp2)	0.03	Orthogroups_2024-Update
Sobic.001G473000.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.004G174200.1	No alias	RNA helicase *(Prp2)	0.03	Orthogroups_2024-Update
evm.model.contig_594.3	No alias	(at1g32490 : 556.0) Encodes a homolog of the yeast PRP2...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0006476	protein deacetylation	IEP	Predicted GO
BP	GO:0006536	glutamate metabolic process	IEP	Predicted GO
BP	GO:0006537	glutamate biosynthetic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0015930	glutamate synthase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
BP	GO:0016569	covalent chromatin modification	IEP	Predicted GO
BP	GO:0016570	histone modification	IEP	Predicted GO
BP	GO:0016575	histone deacetylation	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
BP	GO:0035601	protein deacylation	IEP	Predicted GO
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:0098732	macromolecule deacylation	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	748	880
IPR011709	DUF1605	1088	1164
IPR003029	S1_domain	252	318
IPR011545	DEAD/DEAH_box_helicase_dom	556	706
IPR007502	Helicase-assoc_dom	942	1030

External Links

No external refs found!

Glyma.14G217400

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation