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  5. Glyma.15G031900

Glyma.15G031900


Description : RNA helicase family protein


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.15G031900
Cluster HCCA clusters: Cluster_466

Target Alias Description ECC score Gene Family Method Actions
At2g35340 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
At5g13010 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.04 Orthogroups_2024-Update
Bradi1g61220 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Bradi1g64190 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi4g19990 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Cre24.g755347 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
HORVU4Hr1G052730.3 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.01 Orthogroups_2024-Update
Kfl00085_0100 kfl00085_0100_v1.1 (at1g32490 : 1214.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
Kfl00316_0150 kfl00316_0150_v1.1 (at5g13010 : 1240.0) embryo defective 3011 (EMB3011);... 0.02 Orthogroups_2024-Update
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
PSME_00004225-RA No alias (at3g62310 : 1190.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
PSME_00005080-RA No alias (at5g13010 : 1519.0) embryo defective 3011 (EMB3011);... 0.03 Orthogroups_2024-Update
Seita.1G136100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.2G326100.1 No alias RNA helicase *(Prp16) 0.03 Orthogroups_2024-Update
Seita.3G152600.1 No alias RNA helicase *(Prp2) 0.03 Orthogroups_2024-Update
Sobic.002G313400.1 No alias RNA helicase *(Prp16) 0.04 Orthogroups_2024-Update
Sobic.004G174200.1 No alias RNA helicase *(Prp2) 0.06 Orthogroups_2024-Update
Sopen01g053030 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.03 Orthogroups_2024-Update
Sopen05g010270 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.03 Orthogroups_2024-Update
evm.model.contig_2494.11 No alias (at3g62310 : 436.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update
evm.model.contig_450.3 No alias (at3g62310 : 264.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
evm.model.tig00000842.2 No alias (at3g26560 : 568.0) ATP-dependent RNA helicase,... 0.01 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0045116 protein neddylation IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 779 908
IPR011709 DUF1605 1116 1193
IPR007502 Helicase-assoc_dom 972 1058
IPR011545 DEAD/DEAH_box_helicase_dom 580 733
No external refs found!