Glyma.15G097000

Description : chromatin remodeling factor17

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.15G097000
Cluster	HCCA clusters: Cluster_466

Target	Alias	Description	ECC score	Gene Family Method
130534	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
164481	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
440815	No alias	chromatin remodeling 5	0.04	Orthogroups_2024-Update
At2g13370	No alias	Protein CHROMATIN REMODELING 5...	0.04	Orthogroups_2024-Update
At2g25170	No alias	chromatin remodeling factor CHD3 (PICKLE)...	0.05	Orthogroups_2024-Update
At3g06400	No alias	Chromatin-remodeling complex ATPase...	0.06	Orthogroups_2024-Update
At5g44800	No alias	PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]	0.03	Orthogroups_2024-Update
Bradi1g18910	No alias	chromatin remodeling 5	0.09	Orthogroups_2024-Update
Bradi1g26940	No alias	chromatin remodeling 4	0.06	Orthogroups_2024-Update
Bradi1g44177	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.06	Orthogroups_2024-Update
Bradi1g47367	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.05	Orthogroups_2024-Update
Bradi1g78440	No alias	SNF2 domain-containing protein / helicase...	0.04	Orthogroups_2024-Update
Bradi2g35740	No alias	chromatin-remodeling protein 11	0.03	Orthogroups_2024-Update
GRMZM2G010342	No alias	chromatin remodeling 5	0.03	Orthogroups_2024-Update
GRMZM2G316191	No alias	chromatin remodeling 4	0.04	Orthogroups_2024-Update
Glyma.02G281000	No alias	chromatin remodeling 5	0.03	Orthogroups_2024-Update
Glyma.05G131500	No alias	chromatin remodeling 4	0.05	Orthogroups_2024-Update
HORVU1Hr1G019290.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU2Hr1G022450.1	No alias	component *(CHR5) of SAGA transcription co-activator...	0.02	Orthogroups_2024-Update
HORVU7Hr1G041450.33	No alias	SMARCA component *(SYD/BRM/MINU)	0.05	Orthogroups_2024-Update
Kfl00010_0280	kfl00010_0280_v1.1	(at3g06010 : 961.0) Encodes AtCHR12, a SNF2/Brahma-type...	0.03	Orthogroups_2024-Update
Kfl00055_0090	kfl00055_0090_v1....	(q7g8y3\|isw2_orysa : 1337.0) Probable chromatin...	0.02	Orthogroups_2024-Update
Kfl00590_0040	kfl00590_0040_v1.1	(at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in...	0.02	Orthogroups_2024-Update
LOC_Os06g08480	No alias	CHD3-type chromatin-remodeling factor PICKLE, putative, expressed	0.02	Orthogroups_2024-Update
MA_10429361g0010	No alias	(at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);...	0.03	Orthogroups_2024-Update
Mp1g05480.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.04	Orthogroups_2024-Update
Mp4g00040.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Orthogroups_2024-Update
Mp5g06580.2	No alias	chromatin remodeling factor (Snf2)	0.02	Orthogroups_2024-Update
PSME_00001593-RA	No alias	(at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);...	0.03	Orthogroups_2024-Update
PSME_00005765-RA	No alias	(q7g8y3\|isw2_orysa : 1630.0) Probable chromatin...	0.02	Orthogroups_2024-Update
PSME_00009909-RA	No alias	(at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized...	0.04	Orthogroups_2024-Update
PSME_00015826-RA	No alias	(at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type...	0.04	Orthogroups_2024-Update
PSME_00020446-RA	No alias	(at2g44980 : 160.0) SNF2 domain-containing protein /...	0.03	Orthogroups_2024-Update
Potri.001G123400	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
Pp1s235_76V6	No alias	chromatin remodeling complex subunit	0.03	Orthogroups_2024-Update
Pp1s360_39V6	No alias	syd atpase chromatin binding	0.04	Orthogroups_2024-Update
Seita.2G320900.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.05	Orthogroups_2024-Update
Seita.2G419600.1	No alias	component *(CHR5) of SAGA transcription co-activator...	0.05	Orthogroups_2024-Update
Seita.3G058900.1	No alias	SMARCA component *(SYD/BRM/MINU)	0.03	Orthogroups_2024-Update
Seita.4G112400.1	No alias	SMARCA component *(SYD/BRM/MINU)	0.05	Orthogroups_2024-Update
Sobic.002G308700.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Sobic.003G163200.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	Orthogroups_2024-Update
Sobic.010G065300.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.08	Orthogroups_2024-Update
Sopen01g029280	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update
Sopen01g031470	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update
Sopen02g017710	No alias	SNF2 family N-terminal domain	0.06	Orthogroups_2024-Update
evm.model.tig00000217.24	No alias	(at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in...	0.02	Orthogroups_2024-Update
evm.model.tig00000217.25	No alias	(at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in...	0.01	Orthogroups_2024-Update
evm.model.tig00020960.24	No alias	(at2g13370 : 202.0) chromatin remodeling 5 (CHR5);...	0.03	Orthogroups_2024-Update
evm.model.tig00021623.13	No alias	(at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	InterProScan predictions
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predicted GO
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predicted GO
MF	GO:0003774	motor activity	IEP	Predicted GO
MF	GO:0004386	helicase activity	IEP	Predicted GO
MF	GO:0005244	voltage-gated ion channel activity	IEP	Predicted GO
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Predicted GO
MF	GO:0005253	anion channel activity	IEP	Predicted GO
MF	GO:0005254	chloride channel activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0006401	RNA catabolic process	IEP	Predicted GO
BP	GO:0006402	mRNA catabolic process	IEP	Predicted GO
BP	GO:0006821	chloride transport	IEP	Predicted GO
MF	GO:0008308	voltage-gated anion channel activity	IEP	Predicted GO
BP	GO:0009314	response to radiation	IEP	Predicted GO
BP	GO:0009411	response to UV	IEP	Predicted GO
BP	GO:0009416	response to light stimulus	IEP	Predicted GO
BP	GO:0009628	response to abiotic stimulus	IEP	Predicted GO
BP	GO:0010629	negative regulation of gene expression	IEP	Predicted GO
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0022832	voltage-gated channel activity	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
CC	GO:0044430	cytoskeletal part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	510	622
IPR015194	ISWI_HAND-dom	771	853
IPR015195	SLIDE	915	1025
IPR020838	DBINO	103	154
IPR000330	SNF2_N	220	487

External Links

No external refs found!

Glyma.15G097000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation