Glyma.15G118200

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG_42_0001517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001517_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.15G118200
Cluster	HCCA clusters: Cluster_127

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g01021	No alias	pentatricopeptide (PPR) repeat-containing protein	0.02	Orthogroups_2024-Update
Brara.A01912.1	No alias	plastidial RNA processing factor *(SVR7)	0.04	Orthogroups_2024-Update
GRMZM2G128665	No alias	pentatricopeptide (PPR) repeat-containing protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003729	mRNA binding	IEP	Predicted GO
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predicted GO
BP	GO:0006378	mRNA polyadenylation	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO
CC	GO:0071821	FANCM-MHF complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR033443	PPR_long	688	828
IPR033443	PPR_long	257	379
IPR002885	Pentatricopeptide_repeat	602	631
IPR002885	Pentatricopeptide_repeat	566	590
IPR002885	Pentatricopeptide_repeat	633	678
IPR002885	Pentatricopeptide_repeat	502	545
IPR002885	Pentatricopeptide_repeat	386	433
IPR002885	Pentatricopeptide_repeat	176	219

External Links

No external refs found!