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  5. Glyma.15G275400

Glyma.15G275400


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.15G275400
Cluster HCCA clusters: Cluster_539

Target Alias Description ECC score Gene Family Method Actions
A4A49_04568 No alias polygalacturonase-2 0.03 Orthogroups_2024-Update
A4A49_21681 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
Glyma.09G224800 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G162574 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G012200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G209800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.U005701 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G079140.6 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
MA_285723g0010 No alias (at1g70500 : 261.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00023336-RA No alias (at1g80170 : 252.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Seita.2G350500.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.5G383600.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sobic.001G045400.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Solyc12g009420 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57510.1) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 101 426
No external refs found!