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  5. Sopen10g012960

Sopen10g012960


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g012960
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
HORVU5Hr1G045480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G041860.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G047080.1 No alias Unknown function 0.04 Orthogroups_2024-Update
MpVg00650.1 No alias No annotation 0.03 Orthogroups_2024-Update
Sopen02g008020 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g013220 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1283 1394
IPR005162 Retrotrans_gag_dom 204 300
IPR000477 RT_dom 741 900
No external refs found!