Sopen10g013120

Description : MULE transposase domain

Gene families : OG_42_0000284 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000284_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g013120
Cluster	HCCA clusters: Cluster_359

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os07g39460	No alias	transposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os12g08490	No alias	transposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
Solyc05g014520	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen05g002620	No alias	MuDR family transposase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007527	Znf_SWIM	676	706
IPR004332	Transposase_MuDR	229	291
IPR018289	MULE_transposase_dom	427	522

External Links

No external refs found!