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  5. Glyma.16G207400

Glyma.16G207400


Description : Ribosomal protein S3 family protein


Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.16G207400
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
438700 No alias Ribosomal protein S3 family protein 0.02 Orthogroups_2024-Update
A4A49_00336 No alias 40s ribosomal protein s3-3 0.05 Orthogroups_2024-Update
Bradi3g16150 No alias Ribosomal protein S3 family protein 0.09 Orthogroups_2024-Update
Brara.C01612.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.C01619.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.D01897.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.D01899.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
GRMZM2G074300 No alias Ribosomal protein S3 family protein 0.04 Orthogroups_2024-Update
Glyma.10G133800 No alias Ribosomal protein S3 family protein 0.03 Orthogroups_2024-Update
Kfl00057_0410 kfl00057_0410_v1.1 (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.02 Orthogroups_2024-Update
MA_10436283g0010 No alias (at5g35530 : 397.0) Ribosomal protein S3 family protein;... 0.04 Orthogroups_2024-Update
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00007401-RA No alias (at5g35530 : 366.0) Ribosomal protein S3 family protein;... 0.04 Orthogroups_2024-Update
Potri.006G222100 No alias Ribosomal protein S3 family protein 0.04 Orthogroups_2024-Update
Potri.018G049100 No alias Ribosomal protein S3 family protein 0.06 Orthogroups_2024-Update
Pp1s127_74V6 No alias 40s ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s29_222V6 No alias 40s ribosomal protein 0.08 Orthogroups_2024-Update
Pp1s31_178V6 No alias 40s ribosomal protein 0.07 Orthogroups_2024-Update
Pp1s41_146V6 No alias 40s ribosomal protein 0.06 Orthogroups_2024-Update
Pp1s454_3V6 No alias 40s ribosomal protein 0.07 Orthogroups_2024-Update
Seita.2G385700.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Seita.6G050300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Sobic.002G371100.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Sobic.007G053300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Solyc07g041310 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.11 Orthogroups_2024-Update
Solyc08g061850 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.12 Orthogroups_2024-Update
Solyc08g061960 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.1 Orthogroups_2024-Update
Sopen07g020630 No alias Ribosomal protein S3, C-terminal domain 0.1 Orthogroups_2024-Update
Sopen08g017410 No alias Ribosomal protein S3, C-terminal domain 0.06 Orthogroups_2024-Update
Sopen08g017480 No alias Ribosomal protein S3, C-terminal domain 0.07 Orthogroups_2024-Update
evm.model.contig_2149.7 No alias (at5g35530 : 302.0) Ribosomal protein S3 family protein;... 0.13 Orthogroups_2024-Update
evm.model.tig00021462.41 No alias (at2g31610 : 358.0) Ribosomal protein S3 family protein;... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 106 188
IPR004044 KH_dom_type_2 20 93
No external refs found!