Glyma.17G023600

Description : chromatin remodeling factor17

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.17G023600
Cluster	HCCA clusters: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
130534	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
At2g13370	No alias	Protein CHROMATIN REMODELING 5...	0.04	Orthogroups_2024-Update
At2g28290	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
At5g44800	No alias	PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]	0.03	Orthogroups_2024-Update
Bradi1g47367	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Orthogroups_2024-Update
Bradi2g35740	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
Bradi2g36380	No alias	Homeotic gene regulator	0.04	Orthogroups_2024-Update
Glyma.02G281000	No alias	chromatin remodeling 5	0.04	Orthogroups_2024-Update
HORVU1Hr1G021540.17	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	Orthogroups_2024-Update
HORVU4Hr1G088540.8	No alias	chromatin remodeling factor *(ALC1)	0.03	Orthogroups_2024-Update
Mp1g18560.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Orthogroups_2024-Update
PSME_00000065-RA	No alias	(at5g66750 : 813.0) Protein is similar to SWI2/SNF2...	0.03	Orthogroups_2024-Update
Pp1s235_76V6	No alias	chromatin remodeling complex subunit	0.04	Orthogroups_2024-Update
Pp1s360_39V6	No alias	syd atpase chromatin binding	0.02	Orthogroups_2024-Update
Sobic.002G404700.1	No alias	CHD1-type chromatin remodeling factor *(CHR5) &...	0.04	Orthogroups_2024-Update
Solyc06g054560	No alias	RNA helicase DEAH-box19	0.03	Orthogroups_2024-Update
Sopen02g017710	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update
evm.model.contig_2077.13	No alias	(at2g13370 : 595.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update
evm.model.contig_483.3	No alias	(at5g18620 : 838.0) chromatin remodeling factor17...	0.02	Orthogroups_2024-Update
evm.model.tig00021623.13	No alias	(at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	InterProScan predictions
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	motor activity	IEP	Predicted GO
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
MF	GO:0004097	catechol oxidase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0006260	DNA replication	IEP	Predicted GO
BP	GO:0006536	glutamate metabolic process	IEP	Predicted GO
BP	GO:0006537	glutamate biosynthetic process	IEP	Predicted GO
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0015930	glutamate synthase activity	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Predicted GO
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR020838	DBINO	82	132
IPR000330	SNF2_N	197	464
IPR015195	SLIDE	892	1002
IPR015194	ISWI_HAND-dom	748	831
IPR001650	Helicase_C	487	599

External Links

No external refs found!

Glyma.17G023600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation