1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.17G049100

Glyma.17G049100


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0008048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.17G049100
Cluster HCCA clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G078260.12 No alias Unknown function 0.04 Orthogroups_2024-Update
Potri.006G141800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 212 260
IPR002885 Pentatricopeptide_repeat 352 401
IPR002885 Pentatricopeptide_repeat 425 469
IPR002885 Pentatricopeptide_repeat 282 331
IPR002885 Pentatricopeptide_repeat 180 206
IPR002885 Pentatricopeptide_repeat 110 138
No external refs found!