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  5. Glyma.17G053200

Glyma.17G053200


Description : eif4a-2


Gene families : OG_42_0000623 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.17G053200
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
At1g54270 No alias eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1] 0.03 Orthogroups_2024-Update
Bradi1g34170 No alias eukaryotic translation initiation factor 4A1 0.02 Orthogroups_2024-Update
Bradi3g03710 No alias eukaryotic translation initiation factor 4A1 0.05 Orthogroups_2024-Update
Brara.A03225.1 No alias mRNA unwinding factor *(eIF4A)) 0.03 Orthogroups_2024-Update
Brara.E02231.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.04 Orthogroups_2024-Update
Cre03.g199647 No alias eukaryotic initiation factor 4A-III 0.02 Orthogroups_2024-Update
Cre06.g298650 No alias eukaryotic translation initiation factor 4A1 0.01 Orthogroups_2024-Update
Kfl00844_0040 kfl00844_0040_v1.1 (q40471|if4a9_tobac : 738.0) Eukaryotic initiation... 0.01 Orthogroups_2024-Update
MA_10432535g0010 No alias (p35683|if4a_orysa : 628.0) Eukaryotic initiation factor... 0.04 Orthogroups_2024-Update
Mp2g02760.1 No alias mRNA unwinding factor (eIF4A) 0.05 Orthogroups_2024-Update
PSME_00034714-RA No alias (p41380|if4a3_nicpl : 604.0) Eukaryotic initiation... 0.03 Orthogroups_2024-Update
Pp1s31_150V6 No alias Eukaryotic initiation factor 4A-9 (ATP-dependent RNA... 0.02 Orthogroups_2024-Update
Pp1s383_1V6 No alias Eukaryotic initiation factor 4A-9 (ATP-dependent RNA... 0.02 Orthogroups_2024-Update
Pp1s77_16V6 No alias No description available 0.04 Orthogroups_2024-Update
Seita.1G089900.1 No alias mRNA unwinding factor *(eIF4A)) 0.03 Orthogroups_2024-Update
Seita.4G242200.1 No alias mRNA unwinding factor *(eIF4A)) 0.08 Orthogroups_2024-Update
Sobic.004G356900.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.02 Orthogroups_2024-Update
Sobic.010G251100.1 No alias mRNA unwinding factor *(eIF4A)) 0.03 Orthogroups_2024-Update
Solyc08g062800 No alias RNA helicase DEAD26 0.05 Orthogroups_2024-Update
Sopen08g018310 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
evm.model.tig00001339.22 No alias (at3g19760 : 627.0) Encodes an RNA helicase that may be... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 266 374
IPR011545 DEAD/DEAH_box_helicase_dom 65 226
No external refs found!