Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Glycine release: Glyma.17G072100 | |
Cluster | HCCA clusters: Cluster_342 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
106861 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
415185 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
74762 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
82024 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
AC203841.3_FG002 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
At2g29760 | No alias | Pentatricopeptide repeat-containing protein At2g29760,... | 0.03 | Orthogroups_2024-Update | |
At3g29230 | No alias | Pentatricopeptide repeat-containing protein At3g29230... | 0.05 | Orthogroups_2024-Update | |
Bradi2g06450 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g15700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi2g45250 | No alias | mitochondrial RNAediting factor 1 | 0.03 | Orthogroups_2024-Update | |
Bradi3g59950 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.A02193.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.C02021.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F00415.1 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
Brara.F01619.1 | No alias | RNA editing factor *(ECD1) | 0.05 | Orthogroups_2024-Update | |
Brara.G01483.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.I01685.1 | No alias | RNA editing factor *(PGN) | 0.04 | Orthogroups_2024-Update | |
Brara.J00794.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.J01291.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.K00505.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
GRMZM2G000674 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G019689 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G077420 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G129783 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.03G239200 | No alias | mitochondrial editing factor 19 | 0.03 | Orthogroups_2024-Update | |
Glyma.09G086600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.17G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G026070.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G095490.1 | No alias | RNA editing factor *(ECD1) | 0.03 | Orthogroups_2024-Update | |
LOC_Os05g33920 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_205762g0010 | No alias | (at4g02750 : 416.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_291996g0010 | No alias | (at1g11290 : 549.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
MA_59599g0010 | No alias | (at3g49170 : 646.0) embryo defective 2261 (EMB2261);... | 0.03 | Orthogroups_2024-Update | |
PSME_00044871-RA | No alias | (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
Potri.001G186500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.001G322100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.004G047800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.007G068600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.009G037600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.017G091600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.018G067500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Pp1s169_110V6 | No alias | T12J13.14; pentatricopeptide (PPR) repeat-containing... | 0.02 | Orthogroups_2024-Update | |
Seita.1G191400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G247200.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Seita.5G460300.1 | No alias | RNA editing factor *(OTP72) | 0.04 | Orthogroups_2024-Update | |
Seita.8G075300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.9G007900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.9G068200.1 | No alias | RNA editing factor *(DEK36) | 0.03 | Orthogroups_2024-Update | |
Sobic.001G001200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G025800.1 | No alias | RNA editing factor *(CRR22) | 0.02 | Orthogroups_2024-Update | |
Sobic.001G058400.1 | No alias | RNA editing factor *(OTP85) | 0.02 | Orthogroups_2024-Update | |
Sobic.001G444200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G111700.6 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G389200.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.003G119100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.003G337200.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
Sobic.004G199400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.007G208400.1 | No alias | RNA editing factor *(REME1) | 0.02 | Orthogroups_2024-Update | |
Sobic.008G147400.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Solyc01g006920 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc01g081290 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc01g091610 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
Solyc01g094850 | No alias | Pentatricopeptide repeat superfamily protein, putative... | 0.04 | Orthogroups_2024-Update | |
Solyc01g097670 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
Solyc01g112200 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc02g065030 | No alias | No description available | 0.05 | Orthogroups_2024-Update | |
Solyc04g016540 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
Solyc06g084580 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.04 | Orthogroups_2024-Update | |
Solyc07g005850 | No alias | Pentatricopeptide repeat (PPR) superfamily protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc11g008940 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc11g011860 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.04 | Orthogroups_2024-Update | |
Sopen01g041720 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g024180 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
Sopen02g038750 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g038830 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen05g002740 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen05g018650 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen11g001900 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen11g001910 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen11g006690 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen11g017250 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_2025.47 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predicted GO |
BP | GO:0000723 | telomere maintenance | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0004061 | arylformamidase activity | IEP | Predicted GO |
MF | GO:0004797 | thymidine kinase activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006568 | tryptophan metabolic process | IEP | Predicted GO |
BP | GO:0006569 | tryptophan catabolic process | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006586 | indolalkylamine metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006787 | porphyrin-containing compound catabolic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0009063 | cellular amino acid catabolic process | IEP | Predicted GO |
BP | GO:0009074 | aromatic amino acid family catabolic process | IEP | Predicted GO |
BP | GO:0009310 | amine catabolic process | IEP | Predicted GO |
BP | GO:0015994 | chlorophyll metabolic process | IEP | Predicted GO |
BP | GO:0015996 | chlorophyll catabolic process | IEP | Predicted GO |
BP | GO:0016054 | organic acid catabolic process | IEP | Predicted GO |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Predicted GO |
MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Predicted GO |
MF | GO:0019136 | deoxynucleoside kinase activity | IEP | Predicted GO |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Predicted GO |
MF | GO:0019206 | nucleoside kinase activity | IEP | Predicted GO |
BP | GO:0019439 | aromatic compound catabolic process | IEP | Predicted GO |
BP | GO:0019441 | tryptophan catabolic process to kynurenine | IEP | Predicted GO |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predicted GO |
MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
BP | GO:0032200 | telomere organization | IEP | Predicted GO |
BP | GO:0033015 | tetrapyrrole catabolic process | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
BP | GO:0042180 | cellular ketone metabolic process | IEP | Predicted GO |
BP | GO:0042402 | cellular biogenic amine catabolic process | IEP | Predicted GO |
BP | GO:0042430 | indole-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042436 | indole-containing compound catabolic process | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
BP | GO:0042537 | benzene-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Predicted GO |
BP | GO:0046149 | pigment catabolic process | IEP | Predicted GO |
BP | GO:0046218 | indolalkylamine catabolic process | IEP | Predicted GO |
BP | GO:0046395 | carboxylic acid catabolic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0046700 | heterocycle catabolic process | IEP | Predicted GO |
MF | GO:0047746 | chlorophyllase activity | IEP | Predicted GO |
BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
BP | GO:0060249 | anatomical structure homeostasis | IEP | Predicted GO |
BP | GO:0070189 | kynurenine metabolic process | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 370 | 417 |
IPR002885 | Pentatricopeptide_repeat | 470 | 517 |
IPR002885 | Pentatricopeptide_repeat | 168 | 214 |
IPR032867 | DYW_dom | 644 | 768 |
IPR002885 | Pentatricopeptide_repeat | 445 | 466 |
IPR002885 | Pentatricopeptide_repeat | 142 | 167 |
IPR002885 | Pentatricopeptide_repeat | 546 | 570 |
IPR002885 | Pentatricopeptide_repeat | 267 | 295 |
No external refs found! |