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  5. Glyma.17G078700

Glyma.17G078700


Description : RPA70-kDa subunit B


Gene families : OG_42_0005194 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005194_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.17G078700
Cluster HCCA clusters: Cluster_336

Target Alias Description ECC score Gene Family Method Actions
A4A49_14463 No alias replication protein a 70 kda dna-binding subunit d 0.03 Orthogroups_2024-Update
Cre16.g651000 No alias Replication factor-A protein 1-related 0.02 Orthogroups_2024-Update
Kfl00057_0150 kfl00057_0150_v1.... (at5g08020 : 486.0) Encodes a homolog of Replication... 0.02 Orthogroups_2024-Update
Sobic.001G456500.1 No alias component *(RPA1) of single-stranded-DNA binding RPA... 0.03 Orthogroups_2024-Update
Solyc03g115050 No alias Replication A 70 kDa DNA-binding subunit (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen03g034120 No alias Replication factor-A C terminal domain 0.03 Orthogroups_2024-Update
evm.model.contig_2501.4 No alias (at5g61000 : 172.0) RPA70D; FUNCTIONS IN: DNA binding,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006260 DNA replication IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007199 Rep_factor-A_N 6 103
IPR004365 NA-bd_OB_tRNA 188 273
IPR013955 Rep_factor-A_C 464 610
IPR031657 REPA_OB_2 303 401
No external refs found!