1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.18G002000

Glyma.18G002000


Description : glycine-rich RNA-binding protein 2


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.18G002000
Cluster HCCA clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
At3g23830 No alias GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35] 0.03 Orthogroups_2024-Update
At5g54580 No alias Organelle RRM domain-containing protein 2, mitochondrial... 0.04 Orthogroups_2024-Update
At5g61030 No alias GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5] 0.03 Orthogroups_2024-Update
Bradi1g12460 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Bradi1g55020 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Brara.J01355.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G003897 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
GRMZM5G874478 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Glyma.03G172300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.06G263200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G094330.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
HORVU7Hr1G073220.1 No alias RNA editing factor *(ORRM2) 0.04 Orthogroups_2024-Update
LOC_Os07g08960 No alias RNA recognition motif containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g43600 No alias RNA recognition motif containing protein, expressed 0.04 Orthogroups_2024-Update
MA_27149g0010 No alias (at5g61030 : 116.0) encodes a glycine-rich RNA binding... 0.03 Orthogroups_2024-Update
MA_77292g0010 No alias (at5g54580 : 113.0) RNA-binding (RRM/RBD/RNP motifs)... 0.05 Orthogroups_2024-Update
PSME_00033320-RA No alias (at5g54580 : 117.0) RNA-binding (RRM/RBD/RNP motifs)... 0.04 Orthogroups_2024-Update
Potri.001G319800 No alias glycine-rich RNA-binding protein 2 0.05 Orthogroups_2024-Update
Potri.001G409800 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
Sobic.002G058700.2 No alias RNA chaperone *(RZ1) 0.03 Orthogroups_2024-Update
Sobic.007G034400.1 No alias RNA editing factor *(ORRM2) 0.05 Orthogroups_2024-Update
Sobic.008G185900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen02g033510 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen10g023080 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 38 108
No external refs found!