Glyma.18G042100

Description : ARM repeat superfamily protein

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.18G042100
Cluster	HCCA clusters: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
416356	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
A4A49_38562	No alias	u-box domain-containing protein 27	0.02	Orthogroups_2024-Update
At1g66160	No alias	U-box domain-containing protein 20...	0.05	Orthogroups_2024-Update
Bradi1g44390	No alias	ARM repeat superfamily protein	0.03	Orthogroups_2024-Update
Bradi5g09720	No alias	plant U-box 22	0.02	Orthogroups_2024-Update
GRMZM2G071484	No alias	plant U-box 22	0.05	Orthogroups_2024-Update
Glyma.02G196301	No alias	plant U-box 24	0.04	Orthogroups_2024-Update
Glyma.05G189600	No alias	CYS, MET, PRO, and GLY protein 2	0.03	Orthogroups_2024-Update
Glyma.12G095100	No alias	plant U-box 23	0.07	Orthogroups_2024-Update
Glyma.14G212200	No alias	CYS, MET, PRO, and GLY protein 1	0.03	Orthogroups_2024-Update
HORVU2Hr1G076470.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os02g34410	No alias	U-box domain-containing protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os04g49970	No alias	U-box, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g08090	No alias	U-box protein, putative, expressed	0.04	Orthogroups_2024-Update
MA_1663g0020	No alias	(at3g19380 : 184.0) plant U-box 25 (PUB25); FUNCTIONS...	0.04	Orthogroups_2024-Update
MA_415393g0010	No alias	(at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS...	0.03	Orthogroups_2024-Update
PSME_00043035-RA	No alias	(at3g52450 : 95.9) Encodes a cytoplasmically localized...	0.02	Orthogroups_2024-Update
PSME_00054803-RA	No alias	(at3g52450 : 283.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
PSME_00056761-RA	No alias	(at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS...	0.03	Orthogroups_2024-Update
Potri.009G016200	No alias	plant U-box 23	0.04	Orthogroups_2024-Update
Potri.014G101100	No alias	plant U-box 23	0.03	Orthogroups_2024-Update
Potri.016G069500	No alias	plant U-box 24	0.03	Orthogroups_2024-Update
Pp1s198_49V6	No alias	F14J22.1; U-box domain-containing protein [Arabidopsis thaliana]	0.05	Orthogroups_2024-Update
Seita.7G104100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.9G293600.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.004G169200.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.004G169900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc11g068940	No alias	U-box domain-containing family protein (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	Predicted GO
CC	GO:0005618	cell wall	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0005976	polysaccharide metabolic process	IEP	Predicted GO
BP	GO:0005984	disaccharide metabolic process	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0006073	cellular glucan metabolic process	IEP	Predicted GO
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Predicted GO
CC	GO:0030312	external encapsulating structure	IEP	Predicted GO
BP	GO:0044042	glucan metabolic process	IEP	Predicted GO
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0046527	glucosyltransferase activity	IEP	Predicted GO
CC	GO:0048046	apoplast	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	29	100

External Links

No external refs found!

Glyma.18G042100

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation