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  5. Sopen10g017070

Sopen10g017070


Description : Integrase core domain


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g017070
Cluster HCCA clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
At3g20980 No alias Gag-Pol-related retrotransposon family protein... 0.03 Orthogroups_2024-Update
Cre03.g183950 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.01 Orthogroups_2024-Update
Kfl01263_0030 kfl01263_0030_v1.1 (original description: no original description) 0.03 Orthogroups_2024-Update
LOC_Os07g25360 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g40550 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g14500 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Sobic.008G183150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g093580 No alias No description available 0.02 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.04 Orthogroups_2024-Update
Solyc06g011300 No alias No description available 0.02 Orthogroups_2024-Update
Solyc06g060030 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g015410 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g056140 No alias No description available 0.02 Orthogroups_2024-Update
Solyc12g087800 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g025970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g009570 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g009580 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen02g014900 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g015640 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen04g013740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g031680 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen05g019250 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g005860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g016720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g008510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g027810 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen11g022040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g023560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 262 373
IPR025724 GAG-pre-integrase_dom 193 244
No external refs found!