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  5. Glyma.18G139802

Glyma.18G139802


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.18G139802
Cluster HCCA clusters: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
A4A49_04568 No alias polygalacturonase-2 0.02 Orthogroups_2024-Update
A4A49_27120 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
Glyma.11G162574 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.012G119700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G162000.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Sobic.001G045900.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 98 419
No external refs found!