Glyma.18G151600

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_42_0009208 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009208_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.18G151600
Cluster	HCCA clusters: Cluster_208

Target	Alias	Description	ECC score	Gene Family Method
At3g47840	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Orthogroups_2024-Update
PSME_00052954-RA	No alias	(at4g13650 : 543.0) Pentatricopeptide repeat (PPR)...	0.05	Orthogroups_2024-Update
Seita.3G132900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	191	220
IPR002885	Pentatricopeptide_repeat	466	491
IPR002885	Pentatricopeptide_repeat	163	190
IPR002885	Pentatricopeptide_repeat	89	114
IPR002885	Pentatricopeptide_repeat	494	523
IPR002885	Pentatricopeptide_repeat	635	661
IPR002885	Pentatricopeptide_repeat	566	590
IPR002885	Pentatricopeptide_repeat	264	287
IPR002885	Pentatricopeptide_repeat	289	337
IPR002885	Pentatricopeptide_repeat	390	437

External Links

No external refs found!