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  5. Glyma.18G177200

Glyma.18G177200


Description : laccase 17


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.18G177200
Cluster HCCA clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
95740 No alias laccase 17 0.03 Orthogroups_2024-Update
At5g01190 No alias Laccase-10 [Source:UniProtKB/Swiss-Prot;Acc:Q6ID18] 0.04 Orthogroups_2024-Update
At5g03260 No alias Laccase-11 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZA1] 0.03 Orthogroups_2024-Update
At5g60020 No alias Laccase-17 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD5] 0.03 Orthogroups_2024-Update
Bradi2g54680 No alias laccase 17 0.04 Orthogroups_2024-Update
Bradi2g54690 No alias laccase 17 0.02 Orthogroups_2024-Update
GRMZM5G814718 No alias laccase 5 0.03 Orthogroups_2024-Update
Glyma.08G359100 No alias laccase 17 0.02 Orthogroups_2024-Update
PSME_00014449-RA No alias (at5g60020 : 734.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00028271-RA No alias (at5g05390 : 745.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00043660-RA No alias (at5g03260 : 768.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
Potri.009G102700 No alias laccase 11 0.02 Orthogroups_2024-Update
Sobic.003G353200.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Solyc09g011970 No alias Laccase (AHRD V3.3 *** B9HBT3_POPTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 36 149
IPR011706 Cu-oxidase_2 438 560
IPR001117 Cu-oxidase 162 312
No external refs found!