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  5. Solyc02g089070

Solyc02g089070


Description : Eukaryotic translation initiation factor 3 subunit M (AHRD V3.3 *** K4BC61_SOLLC)


Gene families : OG_42_0003404 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g089070
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
416377 No alias Proteasome component (PCI) domain protein 0.01 Orthogroups_2024-Update
Brara.C02977.1 No alias component *(eIF3m) of eIF3 mRNA-to-PIC binding complex 0.06 Orthogroups_2024-Update
Cre09.g417200 No alias Proteasome component (PCI) domain protein 0.02 Orthogroups_2024-Update
Glyma.10G140700 No alias Proteasome component (PCI) domain protein 0.03 Orthogroups_2024-Update
Glyma.20G089400 No alias Proteasome component (PCI) domain protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G006010.1 No alias component *(eIF3m) of eIF3 mRNA-to-PIC binding complex 0.1 Orthogroups_2024-Update
Kfl01007_0030 kfl01007_0030_v1.1 (at3g02200 : 298.0) Proteasome component (PCI) domain... 0.01 Orthogroups_2024-Update
Mp6g05770.1 No alias component eIF3m of eIF3 mRNA-to-PIC binding complex 0.02 Orthogroups_2024-Update
PSME_00003950-RA No alias (at5g15610 : 464.0) Proteasome component (PCI) domain... 0.03 Orthogroups_2024-Update
Seita.3G086500.1 No alias component *(eIF3m) of eIF3 mRNA-to-PIC binding complex 0.14 Orthogroups_2024-Update
Sobic.004G249300.1 No alias component *(eIF3m) of eIF3 mRNA-to-PIC binding complex 0.15 Orthogroups_2024-Update
Sopen02g033830 No alias PCI domain 0.09 Orthogroups_2024-Update
evm.model.tig00020903.23 No alias (at3g02200 : 179.0) Proteasome component (PCI) domain... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000717 PCI_dom 259 359
No external refs found!