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  5. Glyma.18G255900

Glyma.18G255900


Description : Pectate lyase family protein


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.18G255900
Cluster HCCA clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.04 Orthogroups_2024-Update
A4A49_16801 No alias putative pectate lyase 1 0.03 Orthogroups_2024-Update
A4A49_40134 No alias putative pectate lyase p59 0.04 Orthogroups_2024-Update
A4A49_40716 No alias putative pectate lyase 16 0.03 Orthogroups_2024-Update
At1g67750 No alias Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8] 0.03 Orthogroups_2024-Update
At3g07010 No alias Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8] 0.03 Orthogroups_2024-Update
At3g24230 No alias Probable pectate lyase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM5] 0.03 Orthogroups_2024-Update
At5g48900 No alias Probable pectate lyase 20... 0.03 Orthogroups_2024-Update
Brara.D00702.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.G02735.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.I00410.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
GRMZM2G323418 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.08G296900 No alias Pectate lyase family protein 0.04 Orthogroups_2024-Update
Glyma.11G244900 No alias Pectate lyase family protein 0.04 Orthogroups_2024-Update
Glyma.17G126500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G020200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G075970.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
MA_10437227g0010 No alias (at4g24780 : 367.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00000524-RA No alias (at4g24780 : 590.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00005709-RA No alias (at3g07010 : 494.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00009672-RA No alias (at5g48900 : 608.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
PSME_00019824-RA No alias (at1g67750 : 587.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
PSME_00020308-RA No alias (at4g13710 : 598.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00030878-RA No alias (at5g48900 : 447.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00032290-RA No alias (at4g24780 : 602.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00046555-RA No alias (at4g24780 : 518.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.001G052300 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G008100 No alias root hair specific 14 0.05 Orthogroups_2024-Update
Potri.015G087800 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.4G230900.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sobic.003G322800.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sobic.004G091000.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sobic.010G034200.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Solyc02g080910 No alias Pectate lyase (AHRD V3.3 *** K4B9W1_SOLLC) 0.03 Orthogroups_2024-Update
Solyc03g111690 No alias Pectate lyase family protein (AHRD V3.3 *** AT1G67750.1) 0.03 Orthogroups_2024-Update
Sopen02g032420 No alias Pectate lyase 0.03 Orthogroups_2024-Update
Sopen03g030810 No alias Pectate lyase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 175 356
IPR007524 Pec_lyase_N 27 79
No external refs found!