1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.18G287500

Glyma.18G287500


Description : mitochondrial editing factor 22


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.18G287500
Cluster HCCA clusters: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
173093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At3g29230 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Orthogroups_2024-Update
At4g18840 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 Orthogroups_2024-Update
At4g38010 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.03 Orthogroups_2024-Update
At5g03800 No alias Glycosyltransferase (Fragment)... 0.03 Orthogroups_2024-Update
Bradi1g72290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g62320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g49340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A02032.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.03G073766 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G073180.8 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G019130.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G091320.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G111860.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os12g08140 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
Potri.001G322100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G058700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G074500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Potri.004G043400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.006G105700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Pp1s103_35V6 No alias MZB10.7; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Pp1s13_264V6 No alias F4I10.100; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G247200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G065900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G357300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G164600.1 No alias RNA editing factor *(MEF12) 0.02 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G341000.1 No alias RNA editing factor *(MEF25) 0.03 Orthogroups_2024-Update
Sobic.001G478900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc01g098150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc06g076900 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g003070 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g017250 No alias PPR repeat family 0.04 Orthogroups_2024-Update
evm.model.contig_2025.47 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030674 protein binding, bridging IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0051015 actin filament binding IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 117 164
IPR002885 Pentatricopeptide_repeat 320 359
IPR002885 Pentatricopeptide_repeat 420 467
IPR002885 Pentatricopeptide_repeat 219 265
IPR002885 Pentatricopeptide_repeat 395 416
IPR032867 DYW_dom 594 717
No external refs found!