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  5. Glyma.19G024400

Glyma.19G024400


Description : RNA-binding KH domain-containing protein


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G024400
Cluster HCCA clusters: Cluster_340

Target Alias Description ECC score Gene Family Method Actions
Bradi3g29870 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Bradi4g34220 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
GRMZM5G871419 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
LOC_Os03g25970 No alias KH domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00014646-RA No alias (at1g51580 : 281.0) RNA-binding KH domain-containing... 0.03 Orthogroups_2024-Update
Potri.007G011900 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
Potri.010G251700 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Potri.017G042500 No alias RNA-binding KH domain-containing protein 0.05 Orthogroups_2024-Update
Seita.9G385500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g067210 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Sopen12g024250 No alias KH domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 285 332
IPR004088 KH_dom_type_1 141 208
IPR004088 KH_dom_type_1 45 96
IPR004088 KH_dom_type_1 370 432
No external refs found!