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  5. Glyma.19G061100

Glyma.19G061100


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G061100
Cluster HCCA clusters: Cluster_448

Target Alias Description ECC score Gene Family Method Actions
A4A49_58689 No alias heterogeneous nuclear ribonucleoprotein 1 0.03 Orthogroups_2024-Update
HORVU7Hr1G087550.5 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os10g33230 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_79622g0010 No alias (at5g55550 : 245.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
PSME_00041420-RA No alias (at5g40490 : 199.0) RNA-binding (RRM/RBD/RNP motifs)... 0.05 Orthogroups_2024-Update
Solyc04g077520 No alias RNA-binding family protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 136 204
IPR000504 RRM_dom 46 113
No external refs found!