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  5. Glyma.19G154600

Glyma.19G154600


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG_42_0003294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003294_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G154600
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
evm.model.contig_448.3 No alias (at4g02840 : 117.0) Small nuclear ribonucleoprotein... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005795 Golgi stack IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031984 organelle subcompartment IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098791 Golgi subcompartment IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 5 69
No external refs found!