1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.19G161400

Glyma.19G161400


Description : photosystem II reaction center W


Gene families : OG_42_0003970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G161400
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
A4A49_05181 No alias photosystem ii reaction center w protein, chloroplastic 0.06 Orthogroups_2024-Update
A4A49_19163 No alias photosystem ii reaction center w protein, chloroplastic 0.03 Orthogroups_2024-Update
Bradi2g20380 No alias photosystem II reaction center W 0.04 Orthogroups_2024-Update
Brara.D01828.1 No alias component *(PsbW) of PS-II complex 0.07 Orthogroups_2024-Update
Brara.E01277.1 No alias component *(PsbW) of PS-II complex 0.05 Orthogroups_2024-Update
HORVU1Hr1G078140.4 No alias component *(PsbW) of PS-II complex 0.04 Orthogroups_2024-Update
Kfl00638_0030 kfl00638_0030_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Mp5g14190.1 No alias component PsbW of PS-II complex 0.07 Orthogroups_2024-Update
Potri.002G044300 No alias photosystem II reaction center W 0.03 Orthogroups_2024-Update
Pp1s185_110V6 No alias photosystem ii reaction center w chloroplast 0.08 Orthogroups_2024-Update
Pp1s185_111V6 No alias photosystem ii reaction center w chloroplast 0.04 Orthogroups_2024-Update
Seita.3G184900.1 No alias component *(PsbW) of PS-II complex 0.06 Orthogroups_2024-Update
Seita.5G336700.1 No alias component *(PsbW) of PS-II complex 0.1 Orthogroups_2024-Update
Sobic.003G313000.1 No alias component *(PsbW) of PS-II complex 0.08 Orthogroups_2024-Update
Sobic.009G191300.1 No alias component *(PsbW) of PS-II complex 0.03 Orthogroups_2024-Update
Solyc06g084050 No alias LOW QUALITY:isochorismate synthase 2 (AHRD V3.3 --* AT1G18870.2) 0.04 Orthogroups_2024-Update
Solyc09g065910 No alias photosystem II reaction center W (AHRD V3.3 *** AT2G30570.1) 0.04 Orthogroups_2024-Update
Sopen06g035440 No alias Photosystem II reaction centre W protein (PsbW) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA InterProScan predictions
CC GO:0009523 photosystem II IEA InterProScan predictions
BP GO:0015979 photosynthesis IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015995 chlorophyll biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR009806 PSII_PsbW_class2 1 132
No external refs found!