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  5. Glyma.19G173400

Glyma.19G173400


Description : Histone superfamily protein


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G173400
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
182308 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
A4A49_29058 No alias histone h2b 0.03 Orthogroups_2024-Update
A4A49_57525 No alias putative histone h2b.1 0.06 Orthogroups_2024-Update
A4A49_60323 No alias putative histone h2b.1 0.03 Orthogroups_2024-Update
At2g37470 No alias Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0] 0.05 Orthogroups_2024-Update
At3g09480 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V4X7] 0.04 Orthogroups_2024-Update
At3g45980 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6] 0.04 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.06 Orthogroups_2024-Update
Bradi1g08860 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g54520 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Brara.B01057.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.07 Orthogroups_2024-Update
Brara.I03652.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Brara.J01359.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Brara.J01445.1 No alias histone *(H2B) 0.14 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g266750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g268250 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g271376 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g276550 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G065200 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G056530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G058440.4 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU1Hr1G066130.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G078480.6 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
HORVU3Hr1G086610.4 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU4Hr1G009040.2 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU5Hr1G094500.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU6Hr1G087190.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU7Hr1G110310.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.03 Orthogroups_2024-Update
LOC_Os01g06010 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
MA_10434433g0010 No alias (at3g45980 : 175.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
MA_9293473g0010 No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.04 Orthogroups_2024-Update
Mp4g13450.1 No alias histone (H2B) 0.02 Orthogroups_2024-Update
Mp7g05430.1 No alias histone (H2B) 0.03 Orthogroups_2024-Update
PSME_00025825-RA No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.02 Orthogroups_2024-Update
PSME_00041882-RA No alias (at5g22880 : 162.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
Potri.008G029900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Sobic.003G200501.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.05 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.05 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.06 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.05 Orthogroups_2024-Update
Solyc06g074780 No alias Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC) 0.05 Orthogroups_2024-Update
Solyc06g074790 No alias Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) 0.05 Orthogroups_2024-Update
Solyc06g075800 No alias Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) 0.05 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.05 Orthogroups_2024-Update
Solyc11g007930 No alias Histone H2B (AHRD V3.3 *** K4D554_SOLLC) 0.05 Orthogroups_2024-Update
Solyc11g066430 No alias histone H2B 0.04 Orthogroups_2024-Update
Solyc12g013510 No alias Histone H2B (AHRD V3.3 *** K4DCN6_SOLLC) 0.03 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen11g003800 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 7 114
No external refs found!