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  5. Glyma.19G178800

Glyma.19G178800


Description : Ribosomal protein S12/S23 family protein


Gene families : OG_42_0001537 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G178800
Cluster HCCA clusters: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
145246 No alias Ribosomal protein S12/S23 family protein 0.11 Orthogroups_2024-Update
A4A49_33378 No alias 40s ribosomal protein s23 0.03 Orthogroups_2024-Update
A4A49_59751 No alias 40s ribosomal protein s23 0.16 Orthogroups_2024-Update
Bradi2g22897 No alias Ribosomal protein S12/S23 family protein 0.14 Orthogroups_2024-Update
Bradi2g54210 No alias Ribosomal protein S12/S23 family protein 0.1 Orthogroups_2024-Update
Brara.A03520.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.B00072.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.C00091.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Brara.C03262.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.J02847.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Cre12.g504200 No alias Ribosomal protein S12/S23 family protein 0.16 Orthogroups_2024-Update
Glyma.13G137100 No alias Ribosomal protein S12/S23 family protein 0.09 Orthogroups_2024-Update
HORVU1Hr1G071570.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
HORVU3Hr1G087380.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
HORVU5Hr1G066080.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Kfl00077_0130 kfl00077_0130_v1.1 (p46297|rs23_fraan : 274.0) 40S ribosomal protein S23... 0.07 Orthogroups_2024-Update
LOC_Os03g60400 No alias 40S ribosomal protein S23, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436470g0020 No alias (p46297|rs23_fraan : 282.0) 40S ribosomal protein S23... 0.06 Orthogroups_2024-Update
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00017761-RA No alias (p46297|rs23_fraan : 278.0) 40S ribosomal protein S23... 0.1 Orthogroups_2024-Update
PSME_00017762-RA No alias (p46297|rs23_fraan : 282.0) 40S ribosomal protein S23... 0.03 Orthogroups_2024-Update
Potri.006G131500 No alias Ribosomal protein S12/S23 family protein 0.04 Orthogroups_2024-Update
Potri.008G044400 No alias Ribosomal protein S12/S23 family protein 0.05 Orthogroups_2024-Update
Potri.010G217100 No alias Ribosomal protein S12/S23 family protein 0.03 Orthogroups_2024-Update
Pp1s135_33V6 No alias 40s ribosomal protein s23 0.14 Orthogroups_2024-Update
Pp1s264_73V6 No alias 40s ribosomal protein s23 0.1 Orthogroups_2024-Update
Pp1s287_20V6 No alias 40s ribosomal protein s23 0.14 Orthogroups_2024-Update
Pp1s372_2V6 No alias 40s ribosomal protein s23 0.05 Orthogroups_2024-Update
Pp1s61_268V6 No alias 40s ribosomal protein s23 0.12 Orthogroups_2024-Update
Seita.3G213400.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Seita.5G371300.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Seita.9G035900.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.003G346600.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.009G166500.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Solyc09g007350 No alias Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO) 0.13 Orthogroups_2024-Update
Solyc10g084310 No alias Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO) 0.03 Orthogroups_2024-Update
Solyc10g086020 No alias interactor of constitutive active ROPs 3 0.14 Orthogroups_2024-Update
Sopen09g002250 No alias Ribosomal protein S12/S23 0.17 Orthogroups_2024-Update
Sopen10g033750 No alias Ribosomal protein S12/S23 0.06 Orthogroups_2024-Update
Sopen10g035390 No alias Ribosomal protein S12/S23 0.15 Orthogroups_2024-Update
evm.model.contig_4434.4 No alias (p46297|rs23_fraan : 218.0) 40S ribosomal protein S23... 0.19 Orthogroups_2024-Update
evm.model.tig00001264.27 No alias (at5g02960 : 160.0) Ribosomal protein S12/S23 family... 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 31 141
No external refs found!