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Description : 60S acidic ribosomal protein family
Gene families : OG_42_0001058 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001058_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Glycine release: Glyma.19G193200 | |
| Cluster | HCCA clusters: Cluster_158 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 139397 | No alias | 60S acidic ribosomal protein family | 0.1 | Orthogroups_2024-Update | |
| At2g27710 | No alias | AT2G27710 protein [Source:UniProtKB/TrEMBL;Acc:B9DGN3] | 0.06 | Orthogroups_2024-Update | |
| At2g27720 | No alias | 60S acidic ribosomal protein family... | 0.05 | Orthogroups_2024-Update | |
| At3g44590 | No alias | Acidic ribosomal protein P2-like... | 0.05 | Orthogroups_2024-Update | |
| Bradi2g23830 | No alias | 60S acidic ribosomal protein family | 0.08 | Orthogroups_2024-Update | |
| Bradi5g09212 | No alias | 60S acidic ribosomal protein family | 0.09 | Orthogroups_2024-Update | |
| Bradi5g09217 | No alias | 60S acidic ribosomal protein family | 0.12 | Orthogroups_2024-Update | |
| Brara.D01652.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Brara.G01325.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Cre02.g143050 | No alias | 60S acidic ribosomal protein family | 0.14 | Orthogroups_2024-Update | |
| GRMZM2G075630 | No alias | 60S acidic ribosomal protein family | 0.1 | Orthogroups_2024-Update | |
| GRMZM2G102891 | No alias | 60S acidic ribosomal protein family | 0.06 | Orthogroups_2024-Update | |
| GRMZM2G119809 | No alias | 60S acidic ribosomal protein family | 0.1 | Orthogroups_2024-Update | |
| Glyma.12G182800 | No alias | 60S acidic ribosomal protein family | 0.06 | Orthogroups_2024-Update | |
| Glyma.U031221 | No alias | 60S acidic ribosomal protein family | 0.07 | Orthogroups_2024-Update | |
| HORVU1Hr1G073640.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| LOC_Os05g37330 | No alias | 60S acidic ribosomal protein, putative, expressed | 0.04 | Orthogroups_2024-Update | |
| MA_10431146g0010 | No alias | (o24415|rla2b_maize : 90.5) 60S acidic ribosomal protein... | 0.03 | Orthogroups_2024-Update | |
| Mp1g06260.1 | No alias | component RPP2 of LSU proteome component | 0.08 | Orthogroups_2024-Update | |
| Mp1g08160.1 | No alias | component RPP2 of LSU proteome component | 0.05 | Orthogroups_2024-Update | |
| PSME_00022751-RA | No alias | (o24415|rla2b_maize : 100.0) 60S acidic ribosomal... | 0.09 | Orthogroups_2024-Update | |
| PSME_00050387-RA | No alias | (original description: no original description) | 0.08 | Orthogroups_2024-Update | |
| Potri.004G185800 | No alias | 60S acidic ribosomal protein family | 0.06 | Orthogroups_2024-Update | |
| Potri.009G146200 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| Pp1s14_289V6 | No alias | 60s acidic ribosomal protein | 0.11 | Orthogroups_2024-Update | |
| Pp1s21_165V6 | No alias | 60s acidic ribosomal protein | 0.15 | Orthogroups_2024-Update | |
| Pp1s30_261V6 | No alias | 60s acidic ribosomal protein | 0.11 | Orthogroups_2024-Update | |
| Pp1s409_34V6 | No alias | 60s acidic ribosomal protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s51_319V6 | No alias | 60s acidic ribosomal protein | 0.14 | Orthogroups_2024-Update | |
| Seita.6G192700.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Seita.7G089200.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
| Sobic.006G067800.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
| Sobic.006G260400.1 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Sobic.009G242300.3 | No alias | component *(RPP2) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Solyc06g074430 | No alias | 60s acidic ribosomal protein-like protein (AHRD V3.3 ***... | 0.07 | Orthogroups_2024-Update | |
| Solyc11g067100 | No alias | 60s acidic ribosomal family protein (AHRD V3.3 *** A9PCM7_POPTR) | 0.08 | Orthogroups_2024-Update | |
| Sopen01g004990 | No alias | 60s Acidic ribosomal protein | 0.11 | Orthogroups_2024-Update | |
| Sopen06g030910 | No alias | 60s Acidic ribosomal protein | 0.13 | Orthogroups_2024-Update | |
| Sopen11g026810 | No alias | 60s Acidic ribosomal protein | 0.06 | Orthogroups_2024-Update | |
| evm.model.contig_2346.3 | No alias | no hits & (original description: no original description) | 0.08 | Orthogroups_2024-Update | |
| evm.model.contig_3407.5 | No alias | no hits & (original description: no original description) | 0.1 | Orthogroups_2024-Update | |
| evm.model.tig00020830.75 | No alias | no hits & (original description: no original description) | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006405 | RNA export from nucleus | IEP | Predicted GO |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| CC | GO:0008541 | proteasome regulatory particle, lid subcomplex | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043248 | proteasome assembly | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0050657 | nucleic acid transport | IEP | Predicted GO |
| BP | GO:0050658 | RNA transport | IEP | Predicted GO |
| BP | GO:0051028 | mRNA transport | IEP | Predicted GO |
| BP | GO:0051168 | nuclear export | IEP | Predicted GO |
| BP | GO:0051169 | nuclear transport | IEP | Predicted GO |
| BP | GO:0051236 | establishment of RNA localization | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |