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  5. Glyma.19G213400

Glyma.19G213400


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G213400
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
At3g61490 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
At4g23820 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
Brara.I04239.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.08G017300 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G138100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G116400 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G054810.4 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
LOC_Os03g03350 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g50960 No alias polygalacturonase, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g14160 No alias polygalacturonase, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.04 Orthogroups_2024-Update
MA_104339g0010 No alias (at4g23820 : 575.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_10436451g0020 No alias (at4g23500 : 273.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_11025g0010 No alias (at4g33440 : 320.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00027467-RA No alias (at3g61490 : 556.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00040829-RA No alias (at3g61490 : 545.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.005G063400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.004G319600.2 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc03g007950 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G23500.1) 0.03 Orthogroups_2024-Update
Solyc05g049980 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G61490.4) 0.03 Orthogroups_2024-Update
Sopen08g030460 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 153 434
No external refs found!