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  5. Glyma.19G219700

Glyma.19G219700


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0002108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G219700
Cluster HCCA clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Bradi2g33437 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G087900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g19170 No alias polygalacturonase, putative, expressed 0.04 Orthogroups_2024-Update
Potri.013G005000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.5G156600.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sopen04g003350 No alias Glycosyl hydrolases family 28 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 93 416
No external refs found!