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  5. Glyma.19G226200

Glyma.19G226200


Description : Sec23/Sec24 protein transport family protein


Gene families : OG_42_0001342 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G226200
Cluster HCCA clusters: Cluster_317

Target Alias Description ECC score Gene Family Method Actions
140536 No alias Sec23/Sec24 protein transport family protein 0.02 Orthogroups_2024-Update
A4A49_09399 No alias protein transport protein sec24-like protein 0.02 Orthogroups_2024-Update
Bradi4g07970 No alias Sec23/Sec24 protein transport family protein 0.06 Orthogroups_2024-Update
Bradi5g01280 No alias Sec23/Sec24 protein transport family protein 0.07 Orthogroups_2024-Update
MA_10434705g0010 No alias (at3g07100 : 298.0) Encodes SEC24a/ERMO2. Required for... 0.03 Orthogroups_2024-Update
PSME_00010258-RA No alias (at3g07100 : 1033.0) Encodes SEC24a/ERMO2. Required for... 0.03 Orthogroups_2024-Update
PSME_00013998-RA No alias (at4g32640 : 1065.0) Sec23/Sec24 protein transport... 0.04 Orthogroups_2024-Update
Pp1s59_293V6 No alias T22K7.20; sec23/sec24 transport family protein... 0.02 Orthogroups_2024-Update
Solyc02g082220 No alias Transport protein Sec24 (AHRD V3.3 *** B9HM39_POPTR) 0.03 Orthogroups_2024-Update
evm.model.tig00000829.3 No alias (at3g44340 : 410.0) homologous to yeast and animal Sec24... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0006888 ER to Golgi vesicle-mediated transport IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
CC GO:0030127 COPII vesicle coat IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006896 Sec23/24_trunk_dom 431 667
IPR006895 Znf_Sec23_Sec24 357 394
IPR006900 Sec23/24_helical_dom 768 871
IPR012990 Sec23_24_beta_S 673 757
No external refs found!