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  5. Glyma.19G239200

Glyma.19G239200


Description : gamma histone variant H2AX


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G239200
Cluster HCCA clusters: Cluster_300

Target Alias Description ECC score Gene Family Method Actions
Glyma.13G334300 No alias histone H2A 12 0.04 Orthogroups_2024-Update
HORVU5Hr1G105090.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G112470.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
MA_3822944g0010 No alias (p50567|h2a_chlre : 97.1) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
Mp3g00840.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
Pp1s72_85V6 No alias histone h2a 0.02 Orthogroups_2024-Update
Solyc03g005220 No alias calcium-dependent protein kinase 21 (AHRD V3.3 --* AT4G04720.2) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003964 RNA-directed DNA polymerase activity IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 94
IPR032454 Histone_H2A_C 97 130
No external refs found!