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  5. Glyma.19G255500

Glyma.19G255500


Description : cyclic nucleotide gated channel 1


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G255500
Cluster HCCA clusters: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
A4A49_26569 No alias putative cyclic nucleotide-gated ion channel 16 0.03 Orthogroups_2024-Update
Bradi2g57697 No alias cyclic nucleotide-gated channel 18 0.02 Orthogroups_2024-Update
GRMZM2G023534 No alias cyclic nucleotide-gated channel 14 0.06 Orthogroups_2024-Update
Glyma.06G271200 No alias cyclic nucleotide-gated cation channel 4 0.03 Orthogroups_2024-Update
Glyma.16G025400 No alias cyclic nucleotide-gated channel 13 0.03 Orthogroups_2024-Update
HORVU5Hr1G088830.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Kfl00018_0440 kfl00018_0440_v1.1 (at4g30360 : 523.0) member of Cyclic nucleotide gated... 0.02 Orthogroups_2024-Update
PSME_00010744-RA No alias (at3g17700 : 191.0) cyclic nucleotide-binding... 0.03 Orthogroups_2024-Update
Potri.017G089800 No alias Cyclic nucleotide-regulated ion channel family protein 0.03 Orthogroups_2024-Update
Pp1s183_83V6 No alias cyclic nucleotide and calmodulin-regulated ion channel 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan predictions
BP GO:0006811 ion transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 36 359
IPR000595 cNMP-bd_dom 465 554
No external refs found!