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  5. Sopen10g021770

Sopen10g021770


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g021770
Cluster HCCA clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
Sopen02g004560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen02g012310 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g023460 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen06g012360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen12g010440 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen12g011740 No alias Integrase core domain 0.04 Orthogroups_2024-Update
evm.model.contig_3758.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 161 257
IPR000477 RT_dom 698 857
No external refs found!