Sopen10g021840

Description : gag-polypeptide of LTR copia-type

Gene families : OG_42_0003222 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003222_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g021840
Cluster	HCCA clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sopen04g019980	No alias	Retrotransposon gag protein	0.03	Orthogroups_2024-Update
Sopen04g020230	No alias	Retrotransposon gag protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	710	800
IPR001878	Znf_CCHC	160	174

External Links

No external refs found!