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  5. Glyma.20G074600

Glyma.20G074600


Description : hAT transposon superfamily


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.20G074600
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
At3g22220 No alias HAT transposon superfamily [Source:UniProtKB/TrEMBL;Acc:Q9LIE1] 0.03 Orthogroups_2024-Update
Glyma.01G121600 No alias hAT transposon superfamily 0.04 Orthogroups_2024-Update
Glyma.09G104100 No alias hAT transposon superfamily 0.04 Orthogroups_2024-Update
LOC_Os01g28200 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
PSME_00041191-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
InterPro domains Description Start Stop
IPR003656 Znf_BED 23 57
IPR007021 DUF659 218 366
IPR008906 HATC_C_dom 571 646
No external refs found!