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  5. Glyma.20G104900

Glyma.20G104900


Description : Transcription factor jumonji (jmjC) domain-containing protein


Gene families : OG_42_0000491 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000491_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.20G104900
Cluster HCCA clusters: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
At3g07610 No alias Transcription factor jumonji (JmjC) domain-containing... 0.05 Orthogroups_2024-Update
At4g00990 No alias Transcription factor jumonji (JmjC) domain-containing... 0.08 Orthogroups_2024-Update
Bradi1g35173 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.04 Orthogroups_2024-Update
Brara.C02867.1 No alias histone demethylase *(KDM3) 0.03 Orthogroups_2024-Update
GRMZM2G383210 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.03 Orthogroups_2024-Update
PSME_00000724-RA No alias (at4g00990 : 293.0) Transcription factor jumonji (jmjC)... 0.03 Orthogroups_2024-Update
PSME_00027154-RA No alias (at4g00990 : 676.0) Transcription factor jumonji (jmjC)... 0.02 Orthogroups_2024-Update
Potri.005G027000 No alias Zinc finger, RING-type;Transcription factor... 0.03 Orthogroups_2024-Update
Seita.1G005800.1 No alias histone demethylase *(KDM3) 0.04 Orthogroups_2024-Update
Seita.1G376400.1 No alias histone demethylase *(KDM3) 0.02 Orthogroups_2024-Update
Sobic.001G175000.2 No alias histone demethylase *(KDM3) 0.02 Orthogroups_2024-Update
Solyc02g081010 No alias Transcription factor jumonji (jmjC) domain-containing... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR018866 Znf-4CXXC_R1 350 417
IPR003347 JmjC_dom 978 1075
No external refs found!