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  5. Glyma.20G109000

Glyma.20G109000


Description : Sec23/Sec24 protein transport family protein


Gene families : OG_42_0001342 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.20G109000
Cluster HCCA clusters: Cluster_323

Target Alias Description ECC score Gene Family Method Actions
Bradi4g07970 No alias Sec23/Sec24 protein transport family protein 0.06 Orthogroups_2024-Update
Bradi5g01280 No alias Sec23/Sec24 protein transport family protein 0.03 Orthogroups_2024-Update
Cre01.g035850 No alias clone eighty-four 0.02 Orthogroups_2024-Update
Cre02.g091150 No alias Sec23/Sec24 protein transport family protein 0.02 Orthogroups_2024-Update
Kfl00083_0010 kfl00083_0010_v1.1 (at3g07100 : 780.0) Encodes SEC24a/ERMO2. Required for... 0.03 Orthogroups_2024-Update
Kfl00083_0020 kfl00083_0020_v1.... (at3g44340 : 803.0) homologous to yeast and animal Sec24... 0.02 Orthogroups_2024-Update
MA_10434705g0010 No alias (at3g07100 : 298.0) Encodes SEC24a/ERMO2. Required for... 0.03 Orthogroups_2024-Update
PSME_00010258-RA No alias (at3g07100 : 1033.0) Encodes SEC24a/ERMO2. Required for... 0.03 Orthogroups_2024-Update
Pp1s570_1V6 No alias F17A9.18; protein transport protein Sec24, putative... 0.03 Orthogroups_2024-Update
Seita.3G302100.1 No alias component *(Sec24) of Sec23/24 cargo adaptor subcomplex 0.04 Orthogroups_2024-Update
Seita.7G016400.1 No alias component *(Sec24) of Sec23/24 cargo adaptor subcomplex 0.04 Orthogroups_2024-Update
Seita.8G120000.1 No alias component *(Sec24) of Sec23/24 cargo adaptor subcomplex 0.03 Orthogroups_2024-Update
Sobic.005G114800.2 No alias component *(Sec24) of Sec23/24 cargo adaptor subcomplex 0.04 Orthogroups_2024-Update
Sobic.006G012500.1 No alias component *(Sec24) of Sec23/24 cargo adaptor subcomplex 0.03 Orthogroups_2024-Update
evm.model.tig00000829.3 No alias (at3g44340 : 410.0) homologous to yeast and animal Sec24... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0006888 ER to Golgi vesicle-mediated transport IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
CC GO:0030127 COPII vesicle coat IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR006896 Sec23/24_trunk_dom 494 736
IPR012990 Sec23_24_beta_S 741 826
IPR007123 Gelsolin-like_dom 957 1027
IPR006900 Sec23/24_helical_dom 837 932
IPR006895 Znf_Sec23_Sec24 419 457
No external refs found!