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  5. Glyma.20G143200

Glyma.20G143200


Description : Homeotic gene regulator


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.20G143200
Cluster HCCA clusters: Cluster_445

Target Alias Description ECC score Gene Family Method Actions
Glyma.02G281000 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
Seita.9G112500.1 No alias chromatin remodeling factor *(DDM1) 0.06 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
evm.model.tig00000144.188 No alias (at5g66750 : 92.4) Protein is similar to SWI2/SNF2... 0.01 Orthogroups_2024-Update
evm.model.tig00000350.9 No alias (at2g25170 : 212.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
evm.model.tig00021275.25 No alias (q7g8y3|isw2_orysa : 367.0) Probable chromatin... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0042393 histone binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR029295 SnAC 878 951
IPR000330 SNF2_N 387 665
IPR001650 Helicase_C 685 798
No external refs found!