1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.20G166900

Glyma.20G166900


Description : tubby like protein 1


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.20G166900
Cluster HCCA clusters: Cluster_466

Target Alias Description ECC score Gene Family Method Actions
At1g76900 No alias Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43] 0.04 Orthogroups_2024-Update
Bradi1g18380 No alias tubby like protein 3 0.02 Orthogroups_2024-Update
Bradi2g46350 No alias tubby like protein 7 0.02 Orthogroups_2024-Update
Bradi4g24740 No alias tubby like protein 1 0.03 Orthogroups_2024-Update
Brara.G00196.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G00889.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G068586 No alias tubby like protein 7 0.04 Orthogroups_2024-Update
GRMZM2G163726 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
GRMZM2G378907 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
GRMZM5G866954 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
Glyma.13G214900 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
PSME_00011178-RA No alias (at2g47900 : 345.0) Member of TLP family; tubby like... 0.03 Orthogroups_2024-Update
Seita.3G227800.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.8G043600.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G368000.1 No alias TUB-type transcription factor 0.05 Orthogroups_2024-Update
Sopen03g006730 No alias Tub family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 52 105
IPR000007 Tubby_C 116 425
No external refs found!