Glyma.20G169900

Description : Ribosomal protein S13/S18 family

Gene families : OG_42_0001811 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001811_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.20G169900
Cluster	HCCA clusters: Cluster_212

Target	Alias	Description	ECC score	Gene Family Method
267619	No alias	S18 ribosomal protein	0.11	Orthogroups_2024-Update
A4A49_58029	No alias	40s ribosomal protein s18	0.07	Orthogroups_2024-Update
Bradi1g05670	No alias	Ribosomal protein S13/S18 family	0.13	Orthogroups_2024-Update
Bradi1g55980	No alias	Ribosomal protein S13/S18 family	0.08	Orthogroups_2024-Update
Brara.C02618.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Brara.E01935.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Brara.I02318.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.I02440.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Cre06.g272950	No alias	Ribosomal protein S13/S18 family	0.17	Orthogroups_2024-Update
GRMZM2G130544	No alias	Ribosomal protein S13/S18 family	0.08	Orthogroups_2024-Update
Glyma.10G224200	No alias	Ribosomal protein S13/S18 family	0.03	Orthogroups_2024-Update
HORVU5Hr1G104720.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Kfl00001_0620	kfl00001_0620_v1.1	(at4g09800 : 247.0) encodes a ribosomal protein S18C, a...	0.04	Orthogroups_2024-Update
LOC_Os07g07709	No alias	ribosomal protein S13p/S18e, putative, expressed	0.04	Orthogroups_2024-Update
MA_10429265g0010	No alias	(at4g09800 : 256.0) encodes a ribosomal protein S18C, a...	0.07	Orthogroups_2024-Update
Mp1g07420.1	No alias	component RPS18 of SSU proteome	0.11	Orthogroups_2024-Update
Mp5g02820.1	No alias	component RPS18 of SSU proteome	0.1	Orthogroups_2024-Update
Potri.002G051300	No alias	Ribosomal protein S13/S18 family	0.06	Orthogroups_2024-Update
Potri.005G211200	No alias	Ribosomal protein S13/S18 family	0.05	Orthogroups_2024-Update
Pp1s14_433V6	No alias	40s ribosomal protein s18	0.09	Orthogroups_2024-Update
Pp1s215_71V6	No alias	40s ribosomal protein s18	0.14	Orthogroups_2024-Update
Pp1s215_81V6	No alias	40s ribosomal protein s18	0.14	Orthogroups_2024-Update
Pp1s242_94V6	No alias	40s ribosomal protein s18	0.04	Orthogroups_2024-Update
Seita.2G048400.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Seita.5G053700.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Sobic.001G058900.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Sobic.002G049300.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Solyc03g078290	No alias	Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS)	0.14	Orthogroups_2024-Update
Solyc06g073370	No alias	Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS)	0.07	Orthogroups_2024-Update
Sopen03g021040	No alias	Ribosomal protein S13/S18	0.11	Orthogroups_2024-Update
Sopen06g029750	No alias	Ribosomal protein S13/S18	0.07	Orthogroups_2024-Update
Sopen11g001640	No alias	Ribosomal protein S13/S18	0.04	Orthogroups_2024-Update
evm.model.contig_2176.2	No alias	(at4g09800 : 195.0) encodes a ribosomal protein S18C, a...	0.19	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	Predicted GO
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Predicted GO
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Predicted GO
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predicted GO
BP	GO:0006098	pentose-phosphate shunt	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
BP	GO:0006739	NADP metabolic process	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0009966	regulation of signal transduction	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
BP	GO:0010646	regulation of cell communication	IEP	Predicted GO
BP	GO:0010921	regulation of phosphatase activity	IEP	Predicted GO
MF	GO:0019208	phosphatase regulator activity	IEP	Predicted GO
MF	GO:0019212	phosphatase inhibitor activity	IEP	Predicted GO
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predicted GO
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predicted GO
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predicted GO
BP	GO:0022900	electron transport chain	IEP	Predicted GO
BP	GO:0022904	respiratory electron transport chain	IEP	Predicted GO
BP	GO:0023051	regulation of signaling	IEP	Predicted GO
CC	GO:0030964	NADH dehydrogenase complex	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0031399	regulation of protein modification process	IEP	Predicted GO
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0035303	regulation of dephosphorylation	IEP	Predicted GO
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045271	respiratory chain complex I	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0050790	regulation of catalytic activity	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predicted GO
BP	GO:0051246	regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0051336	regulation of hydrolase activity	IEP	Predicted GO
BP	GO:0065009	regulation of molecular function	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
CC	GO:0098803	respiratory chain complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	14	142

External Links

No external refs found!

Glyma.20G169900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation