Glyma.20G169900


Description : Ribosomal protein S13/S18 family


Gene families : OG_42_0001811 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001811_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.20G169900
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
267619 No alias S18 ribosomal protein 0.11 Orthogroups_2024-Update
A4A49_58029 No alias 40s ribosomal protein s18 0.07 Orthogroups_2024-Update
Bradi1g05670 No alias Ribosomal protein S13/S18 family 0.13 Orthogroups_2024-Update
Bradi1g55980 No alias Ribosomal protein S13/S18 family 0.08 Orthogroups_2024-Update
Brara.C02618.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Brara.E01935.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.I02318.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.I02440.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Cre06.g272950 No alias Ribosomal protein S13/S18 family 0.17 Orthogroups_2024-Update
GRMZM2G130544 No alias Ribosomal protein S13/S18 family 0.08 Orthogroups_2024-Update
Glyma.10G224200 No alias Ribosomal protein S13/S18 family 0.03 Orthogroups_2024-Update
HORVU5Hr1G104720.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Kfl00001_0620 kfl00001_0620_v1.1 (at4g09800 : 247.0) encodes a ribosomal protein S18C, a... 0.04 Orthogroups_2024-Update
LOC_Os07g07709 No alias ribosomal protein S13p/S18e, putative, expressed 0.04 Orthogroups_2024-Update
MA_10429265g0010 No alias (at4g09800 : 256.0) encodes a ribosomal protein S18C, a... 0.07 Orthogroups_2024-Update
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.11 Orthogroups_2024-Update
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.1 Orthogroups_2024-Update
Potri.002G051300 No alias Ribosomal protein S13/S18 family 0.06 Orthogroups_2024-Update
Potri.005G211200 No alias Ribosomal protein S13/S18 family 0.05 Orthogroups_2024-Update
Pp1s14_433V6 No alias 40s ribosomal protein s18 0.09 Orthogroups_2024-Update
Pp1s215_71V6 No alias 40s ribosomal protein s18 0.14 Orthogroups_2024-Update
Pp1s215_81V6 No alias 40s ribosomal protein s18 0.14 Orthogroups_2024-Update
Pp1s242_94V6 No alias 40s ribosomal protein s18 0.04 Orthogroups_2024-Update
Seita.2G048400.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Seita.5G053700.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Sobic.001G058900.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Sobic.002G049300.1 No alias component *(uS13) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Solyc03g078290 No alias Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS) 0.14 Orthogroups_2024-Update
Solyc06g073370 No alias Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS) 0.07 Orthogroups_2024-Update
Sopen03g021040 No alias Ribosomal protein S13/S18 0.11 Orthogroups_2024-Update
Sopen06g029750 No alias Ribosomal protein S13/S18 0.07 Orthogroups_2024-Update
Sopen11g001640 No alias Ribosomal protein S13/S18 0.04 Orthogroups_2024-Update
evm.model.contig_2176.2 No alias (at4g09800 : 195.0) encodes a ribosomal protein S18C, a... 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004864 protein phosphatase inhibitor activity IEP Predicted GO
CC GO:0005747 mitochondrial respiratory chain complex I IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006449 regulation of translational termination IEP Predicted GO
BP GO:0006452 translational frameshifting IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019212 phosphatase inhibitor activity IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030964 NADH dehydrogenase complex IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043243 positive regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
CC GO:0045271 respiratory chain complex I IEP Predicted GO
BP GO:0045727 positive regulation of translation IEP Predicted GO
BP GO:0045901 positive regulation of translational elongation IEP Predicted GO
BP GO:0045905 positive regulation of translational termination IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051247 positive regulation of protein metabolic process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!