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  5. Sopen10g023060

Sopen10g023060


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g023060
Cluster HCCA clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
A4A49_03158 No alias glycine-rich rna-binding protein 4, mitochondrial 0.02 Orthogroups_2024-Update
A4A49_15921 No alias glycine-rich rna-binding protein 4, mitochondrial 0.04 Orthogroups_2024-Update
A4A49_27721 No alias glycine-rich rna-binding protein 0.02 Orthogroups_2024-Update
A4A49_55770 No alias glycine-rich rna-binding protein 0.02 Orthogroups_2024-Update
At2g27330 No alias At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0] 0.03 Orthogroups_2024-Update
At4g39260 No alias Glycine-rich RNA-binding protein 8... 0.02 Orthogroups_2024-Update
Bradi5g09510 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Brara.C01066.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C01346.1 No alias RNA editing factor *(ORRM2) 0.04 Orthogroups_2024-Update
Brara.G03194.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
Glyma.11G117600 No alias cold, circadian rhythm, and rna binding 2 0.02 Orthogroups_2024-Update
Glyma.11G255000 No alias glycine-rich RNA-binding protein 2 0.02 Orthogroups_2024-Update
HORVU3Hr1G093400.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
HORVU5Hr1G002150.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G110370.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
LOC_Os03g46770 No alias RNA recognition motif containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g43600 No alias RNA recognition motif containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10430060g0020 No alias (at5g06210 : 98.2) RNA binding (RRM/RBD/RNP motifs)... 0.04 Orthogroups_2024-Update
MA_36092g0010 No alias (at5g61030 : 147.0) encodes a glycine-rich RNA binding... 0.03 Orthogroups_2024-Update
MA_481822g0010 No alias (at5g61030 : 139.0) encodes a glycine-rich RNA binding... 0.04 Orthogroups_2024-Update
MA_526835g0010 No alias (at5g61030 : 112.0) encodes a glycine-rich RNA binding... 0.02 Orthogroups_2024-Update
MA_9972313g0010 No alias (at5g61030 : 113.0) encodes a glycine-rich RNA binding... 0.03 Orthogroups_2024-Update
Mp1g18780.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Orthogroups_2024-Update
Potri.008G033000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.05 Orthogroups_2024-Update
Potri.014G157300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Seita.7G212800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G021300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G061400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G450300.1 No alias Unknown function 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 10 78
No external refs found!