A4A49_00194

Description : histone h3-like centromeric protein htr12

Gene families : OG_42_0002018 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002018_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Nicotiana release: A4A49_00194
Cluster	HCCA clusters: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
At2g46410	No alias	Transcription factor CPC [Source:UniProtKB/Swiss-Prot;Acc:O22059]	0.03	Orthogroups_2024-Update
Brara.A01768.1	No alias	R3-MYB transcription factor	0.03	Orthogroups_2024-Update
Brara.I00069.1	No alias	R3-MYB transcription factor	0.03	Orthogroups_2024-Update
Glyma.12G100600	No alias	Homeodomain-like superfamily protein	0.04	Orthogroups_2024-Update
Solyc12g005800	No alias	Myb transcription factor (AHRD V3.3 *** A0A072UKM9_MEDTR)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	175	214
IPR007125	Histone_H2A/H2B/H3	33	154

External Links

No external refs found!