Sopen10g024240

Description : Zinc knuckle

Gene families : OG_42_0005846 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g024240
Cluster	HCCA clusters: Cluster_306

Target	Alias	Description	ECC score	Gene Family Method	Actions
PSME_00038677-RA	No alias	(at1g75560 : 300.0) zinc knuckle (CCHC-type) family...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	71	85
IPR001878	Znf_CCHC	172	188
IPR001878	Znf_CCHC	108	123
IPR001878	Znf_CCHC	233	249
IPR001878	Znf_CCHC	153	168
IPR001878	Znf_CCHC	90	105
IPR001878	Znf_CCHC	52	67
IPR001878	Znf_CCHC	214	229

External Links

No external refs found!