1. Home
  2. Species
  3. Nicotiana attenuata
  4. Sequence
  5. A4A49_00880

A4A49_00880


Description : pectinesterase qrt1


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_00880
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
A4A49_27669 No alias pectinesterase 2 0.03 Orthogroups_2024-Update
At2g36700 No alias Putative pectinesterase 14... 0.04 Orthogroups_2024-Update
Brara.I00335.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.J02514.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Glyma.01G006800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G068100 No alias Pectin lyase-like superfamily protein 0.01 Orthogroups_2024-Update
Glyma.14G014500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os09g39760 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
MA_6149868g0010 No alias (at2g36710 : 275.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_87592g0010 No alias (at2g21610 : 332.0) pectinesterase 11 (PE11); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00005566-RA No alias (at1g05310 : 423.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.001G364200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G156300 No alias pectinesterase 11 0.04 Orthogroups_2024-Update
Potri.014G117100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G414500.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.5G313900.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.7G192100.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Sobic.002G370300.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Sopen12g003480 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 54 346
No external refs found!